Primer
sequence and DHPLC conditions
Amplicon
|
Amplified
region |
Primer
sequence (5f-3f) |
size(bp) |
Annealing Temp
(C) |
Oven temp (C) |
% B buffer start/end |
Int 4 |
32638-32889 |
CTGTGAGATGGAAGGAGGAATGTTA GAGAGATTGGAGGCTGTTGAGGTAC |
252 |
59.4 |
58.3 |
53.1-62.1 |
Ex 5 |
32732-33016 |
GATGTGATAGGATGCGACTTGGTCA AATAAAGTGAGGAAAACACGGAGTT |
285 |
57.0 |
58.1 |
54.3-63.3 |
Int 5A |
32931-33320 |
CTCCACAGAGTTTCTCATCTACGAA GGGACTCATCCATCCAACACTTCAT |
390 |
61.6 |
55.6 |
56.9-65.9 |
Int 5B |
33225-33613 |
ATTACTTTGCTCTTGGAATCAGTGG AAAGACAATAGVAGAAATCCCTTTG |
389 |
58.3 |
57.0 |
56.8-65.8 |
Int 5C |
33589-33902 |
GCCAGCTTTTCTGAGCCTCTTAACC GAATTGGGGGTCAGTTATTCTTACA |
314 |
64.0 |
58.0 |
56.6-65.6 |
The
temperature profile of PCR was at 95C for 2 min
followed by 35 cycles at 95C for 30 sec,
at XC (each listed in this
table) for 30 sec and at 72C for 40 sec.