研究業績(奥野)

原著
Nakazato I, Okuno M, Zhou C, Itoh T, Tsutsumi H, Takanashi H, Arimura S
Targeted base editing in the mitochondrial genome of Arabidopsis thaliana
Proc. Natl. Acad. Sci. USA 119(20), 2022.  PubMed

Miyakoshi M, Okayama H, Lejars M, Kanda T, Tanaka Y, Itaya K, Okuno M, Itoh T, Iwai N, Wachi M
Mining RNA-seq data reveals the massive regulon of GcvB small RNA and its physiological significance in maintaining amino acid homeostasis in Escherichia coli
Molecular Microbiology 117(1), 2022.  PubMed

Okuno M, Mizushima S, Kuroiwa A, Itoh T
Analysis of sex chromosome evolution in the clade Palaeognathae from phased genome assembly
Genome Biology and Evolution 13(11), evab242, 2021.  PubMed

Kajitani R, Noguchi H, Gotoh Y, Ogura Y, Yoshimura D, Okuno M, Toyoda A, Kuwahara T, Hayashi T, Itoh T
MetaPlatanus: a metagenome assembler that combines long-range sequence links and species-specific features
Nucleic Acids Research 49(22), 2021.  PubMed

Yuasa H, Kajitani R, Nakamura Y, Takahashi K, Okuno M, Kobayashi F, Shinoda S, Toyoda A, Suzuki Y, Thongtham N, Forsman Z, Bronstein O, Seveso D, Montalbetti E, Taquet C, Eyal G, Yasuda N, Itoh T
Elucidation of the speciation history of three sister species of crown-of-thorns starfish (Acanthaster spp.) based on genomic analysis
DNA Res. 28(4), 2021.  PubMed

Nakazato I, Okuno M, Yamamoto H, Tamura Y, Itoh T, Shikanai T, Takanashi H, Tsutsumi H, Arimura S
Targeted base editing in the plastid genome of Arabidopsis thaliana
Nature Plants 7(1), 2021.  PubMed

Arimura S, Ayabe H, Sugaya H, Okuno M, Tamura Y, Tsuruta Y, Watari Y, Yanase S, Yamauchi T, Itoh T, Toyoda A, Takanashi H, Tsutsumi N
Targeted gene disruption of ATP synthases 6‐1 and 6‐2 in the mitochondrial genome of Arabidopsis thaliana by mitoTALENs
The Plant Journal 104(6), 1459-1471. 2020.  PubMed

Okuno M, Miyamoto S, Itoh T, Seki M, Suzuki Y, Mizushima S, Kuroiwa A.
Expression profiling of sexually dimorphic genes in the Japanese quail, Coturnix japonica.
Sci Rep. 10(1), 1-11. 2020.  PubMed

Kazama T, Okuno M, Watari Y, Yanase S, Koizuka C, Tsuruta Y, Sugaya H, Toyoda A, Itoh T, Tsutsumi N, Toriyama K, Koizuka N, Arimura S.
Curing cytoplasmic male sterility via TALEN-mediated mitochondrial genome editing.
Nature Plants 8;7(5):722-730, 2020.  PubMed

Kajitani R, Yoshimura D, Okuno M, Minakuchi Y, Kagoshima H, Fujiyama A, Kubokawa K, Kohara Y, Toyoda A, Itoh T.
Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions.
Nature Comm. 12;4(10):1702, 2019.  PubMed

Yoshimura D, Kajitani R, Gotoh Y, Katahira K, Okuno M, Ogura Y, Hayashi T, Itoh T.
Evaluation of SNP calling methods for closely related bacterial isolates and a novel high-accuracy pipeline: BactSNP.
Microb Genom. 5(5):e000261, 2019.  PubMed

Ando T, Matsuda T, Goto K, Hara K, Ito A, Hirata J, Yatomi J, Kajitani R, Okuno M, Yamaguchi K, Kobayashi M, Takano T, Minakuchi Y, Seki M, Suzuki Y, Yano K, Itoh T, Shigenobu S, Toyoda A, Niimi T.
Repeated inversions within a pannier intron drive diversification of intraspecific colour patterns of ladybird beetles.
Nature Comm. 21;9(9):3843, 2018.  PubMed

Okuno M, Kajitani R, Ryusui R, Morimoto H, Kodama Y, Itoh T.
Next-generation sequencing analysis of lager brewing yeast strains reveals the evolutionary history of interspecies hybridization.
DNA Res. 4;1(1):23, 2016.  PubMed

Kajitani R, Toshimoto K, Noguchi H, Toyoda A, Okuno M, Yabana M, Ogura Y, Nagayasu E, Maruyama H, Hayashi T, Kohara Y, Fujiyama A, Itoh T.
Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads.
Genome Res. 24(8):1384-1395, 2014.  PubMed

Nikaido M, Noguchi H, Nishihara H, Toyoda A, Suzuki Y, Kajitani R, Suzuki H, Okuno M, Aibara M, Ngatunga B, Mzighani S, Kalombo H, Masengi K, Tuda J, Nogami S, Maeda R, Iwata M, Abe Y, Fujimura K, Okabe M, Amano T, Maeno A, Shiroishi T, Itoh T, Sugano S, Kohara Y, Fujiyama A, Okada N.
Coelacanth genomes reveal signatures for evolutionary transition from water to land.
Genome Res. 22(7):1740-1748, 2013.  PubMed